For a zip file containing all the files in this directory, see http://chemapps.stolaf.edu/jmol/jsmol.zip. This page can use the signed Jmol applet, the unsigned Jmol applet with server-side help, or JSmol using HTML5 with or without WebGL. It is under active development at this time. Credits: GLmol interface written by Takanori Nakane. Java2Script written by Zhou Renjian, et al. Jzlib written by Atsuhiko Yamanaka. Jmol code conversion to JavaScript by Bob Hanson.
cmd display faster sharper info show clear hide spacefill wire ball&stick cartoons fancy not flat color atomno color cpk color structure isosurface vdw off mep translucent opaque labels on off echo larger smaller | Try various buttons. If anything doesn't work please let me know. Current status: 12/8/12 - Jmol is working completely Java-free, requiring only HTML5. Script queuing, animation, spin, vibration, move, moveto, hover, and (guided) navigation, pause/resume are all working; echos/labels working; antialiasDisplay working; synchronous binary and XML file reading working; cartoons, translucency, surfaces -- all are working in a simple HTML5 2D canvas. WebGL is less developed. We are very interested in developing the WebGL option further, as the rendering is faster, but to date it is somewhat limited, with just basic shapes and no text. Enter > and a command into the search box and press ENTER to execute a script command.
rendering options: unsigned Jmol applet signed Jmol applet JSmol (HTML5 only) JSmol (WebGL) image only keyword searches =caffeine? (RCSB) =1blu? (RCSB) =1crn? (RCSB) | this-domain calls estron.cml vasp.xml water.xodydata thread test pause resume !quit !exit moveto delay/hover animation spin/vibration mo homo SQUARED mo DENSITY (slow) load 1hxw.png (image) load square_planar.spartan load water.xyz.gz pmesh "sage.pmesh" load caffeine.mol isosurface "caffeine.jvxl" load 1crn.pdb load k04041.cif {1 1 1} load cl2o.gamess (load +) mo homo mo lumo mesh fill | direct database calls(unless MSIE) load $caffeine (from NCI) load =1blu (from RCSB) load =1d66 (from RCSB) load =4tra (from RCSB) load :1983 (PubChem CID) load :aspirin (PubChem name) load :smiles:CC/C=C/CC (PubChem SMILES) load $CC/C=C/CC (NCI SMILES) load :caffeine (PubChem, with mep) load ==HEM (RCSB ligand)