For a zip file containing all the files in this directory, see http://chemapps.stolaf.edu/jmol/jsmol.zip. This page can use the signed Jmol applet, the unsigned Jmol applet with server-side help, or JSmol using HTML5 with or without WebGL. It is under active development at this time. Credits: GLmol interface written by Takanori Nakane. Java2Script written by Zhou Renjian, et al. Jzlib written by Atsuhiko Yamanaka. Jmol code conversion to JavaScript by Bob Hanson.

cmd display faster sharper info show clear hide
spacefill wire ball&stick cartoons fancy not flat
color atomno color cpk color structure
isosurface vdw off mep translucent opaque
labels on off echo larger smaller

Try various buttons. If anything doesn't work please let me know.
Current status: 12/8/12 - Jmol is working completely Java-free, requiring only HTML5. Script queuing, animation, spin, vibration, move, moveto, hover, and (guided) navigation, pause/resume are all working; echos/labels working; antialiasDisplay working; synchronous binary and XML file reading working; cartoons, translucency, surfaces -- all are working in a simple HTML5 2D canvas. WebGL is less developed. We are very interested in developing the WebGL option further, as the rendering is faster, but to date it is somewhat limited, with just basic shapes and no text. Enter > and a command into the search box and press ENTER to execute a script command.

rendering options:
unsigned Jmol applet
signed Jmol applet
JSmol (HTML5 only)
JSmol (WebGL)
image only
keyword searches
=caffeine? (RCSB)
=1blu? (RCSB)
=1crn? (RCSB)

this-domain calls
estron.cml vasp.xml water.xodydata
thread test
pause resume
!quit !exit
moveto
delay/hover
animation
spin/vibration
mo homo SQUARED
mo DENSITY (slow)
load 1hxw.png (image)
load square_planar.spartan
load water.xyz.gz
pmesh "sage.pmesh"
load caffeine.mol
isosurface "caffeine.jvxl"
load 1crn.pdb
load k04041.cif {1 1 1}
load cl2o.gamess
(load +) mo homo
mo lumo mesh fill

direct database calls(unless MSIE)
load $caffeine (from NCI)
load =1blu (from RCSB)
load =1d66 (from RCSB)
load =4tra (from RCSB)
load :1983 (PubChem CID)
load :aspirin (PubChem name)
load :smiles:CC/C=C/CC (PubChem SMILES)
load $CC/C=C/CC (NCI SMILES)
load :caffeine (PubChem, with mep)
load ==HEM (RCSB ligand)